Y-β-D-GlcX.CHX

NameY-β-D-GlcX.CHX
Synonyms3-Indolyl-β-D-glucopyranoside, cyclohexylammonium salt
CAS Number35804-66-1
Molecular FormulaC14H15NO7
Molecular Weight309.27 g/mol
Specifications & Purity98% (Vacuum foil packaging)

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Y-β-D-GlcX.CHX (3-Indolyl-β-D-glucopyranoside,cyclohexylammonium salt, CAS 35804-66-1) is a chromogenic substrate widely used in molecular biology for detecting β-glucosidase enzyme activity through the formation of a blue indigo precipitate upon hydrolysis. The compound consists of an indole aglycone linked via a β-glycosidic bond to D-glucopyranose, with a cyclohexylammonium counterion improving its solubility in aqueous media. This reagent enables sensitive, non-radioactive screening of recombinant clones, microbial colonies, and enzyme kinetics in glycoscience research, offering localized visualization superior to soluble dyes.

Appearance

  • White to pale beige crystalline powder, odorless and hygroscopic.
  • Slightly soluble in water (~1-5 mg/mL), highly soluble in DMF/DMSO (>50 mg/mL).

Source

  • Chemically synthesized by Koenigs-Knorr glycosylation of 3-indolol with acetobromo-α-D-glucopyranoside, followed by deprotection and salt formation.

Molecular Weight and Structure

  • Free acid/base: C14H15NO7, 309.27 g/mol; cyclohexylammonium salt: C20H28N2O7, 408.45 g/mol.
  • Features β-D-glucopyranosyl-(1→3)-indolyl linkage; InChI: KUYNOZVWCFXSNE-BYNIDDHOSA-N.

Sugar Specificity

  • Selective for β-glucosidase (EC 3.2.1.21), hydrolyzing the β-(1→O)-glycosidic bond.
  • Low activity with β-galactosidase or α-glycosidases; Km ≈ 0.3-0.6 mM.

Biological Activity

  • Cleavage releases 3-indoxyl, which dimerizes/oxidizes to insoluble indigo (blue, λmax 605 nm) in air.
  • Optimal pH 6.8-7.2, 25-37°C; used as renal failure biomarker in plasma.

Purity and Microbial Contamination

  • ≥98.5% HPLC purity; <0.5% water, <10 ppm heavy metals; molecular biology grade.
  • Endotoxin-free (<1 EU/mg), sterile, no microbial growth per USP <71>.

Identity and Quality Control

  • Confirmed by 1H-NMR, HRMS (m/z 310.0924 [M+H]+), [α]D -35° (c=1, H2O), TLC Rf 0.6 (EtOAc:MeOH).
  • Functional test: blue color in 1 hr with β-glucosidase; CAS/IR verified.

Shelf Life and Storage

  • 36-60 months at -20°C under nitrogen in amber glass; stable 6 months at 4°C in solution.
  • Avoid freeze-thaw cycles, light, oxidants; repack in desiccator.

Application

  • Chromogenic detection of β-glucosidase in E. coli cloning, plant pathology, soil microbes.
  • In situ enzyme histochemistry, HTS inhibitor screening, E. coli enumeration.

Key Characteristics

  • High contrast blue precipitate for precise localization; non-toxic; cost-effective vs. fluorescent analogs.
  • Soluble salt form; minimal auto-hydrolysis; broad temperature/pH tolerance.

Citation Links

2. MSDS

3. Tech Data Sheets/Manuals

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